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1.
Discov Nano ; 19(1): 40, 2024 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-38453741

RESUMO

The slip systems and motion behavior of dislocations induced by nano-indentation technique in GaN-based LDs were investigated. Dislocations with burgers vector of b = 1/3 <11 2 ¯ 3> were introduced on either {11 2 ¯ 2} <11 2 ¯ 3>, or {1 1 ¯ 01} <11 2 ¯ 3> pyramidal slip systems in the upper p-GaN layer. Besides, {0001} <11 2 ¯ 0> basal slip system was also activated. The AlGaN/InGaN multi-layers in device can provide mismatch stresses to prevent dislocations from slipping through. It was observed that the density of dislocations induced by the indenter significantly decreased from the upper to the lower regions of the multi-layers. The a + c dislocations on pyramidal slip planes were mostly blocked by the strained layers.

2.
Aging (Albany NY) ; 16(1): 872-910, 2024 Jan 12.
Artigo em Inglês | MEDLINE | ID: mdl-38217545

RESUMO

X-ray repair cross-complementation group 1 (XRCC1) is a pivotal contributor to base excision repair, and its dysregulation has been implicated in the oncogenicity of various human malignancies. However, a comprehensive pan-cancer analysis investigating the prognostic value, immunological functions, and epigenetic associations of XRCC1 remains lacking. To address this knowledge gap, we conducted a systematic investigation employing bioinformatics techniques across 33 cancer types. Our analysis encompassed XRCC1 expression levels, prognostic and diagnostic implications, epigenetic profiles, immune and molecular subtypes, Tumor Mutation Burden (TMB), Microsatellite Instability (MSI), immune checkpoints, and immune infiltration, leveraging data from TCGA, GTEx, CELL, Human Protein Atlas, Ualcan, and cBioPortal databases. Notably, XRCC1 displayed both positive and negative correlations with prognosis across different tumors. Epigenetic analysis revealed associations between XRCC1 expression and DNA methylation patterns in 10 cancer types, as well as enhanced phosphorylation. Furthermore, XRCC1 expression demonstrated associations with TMB and MSI in the majority of tumors. Interestingly, XRCC1 gene expression exhibited a negative correlation with immune cell infiltration levels, except for a positive correlation with M1 and M2 macrophages and monocytes in most cancers. Additionally, we observed significant correlations between XRCC1 and immune checkpoint gene expression levels. Lastly, our findings implicated XRCC1 in DNA replication and repair processes, shedding light on the precise mechanisms underlying its oncogenic effects. Overall, our study highlights the potential of XRCC1 as a prognostic and immunological pan-cancer biomarker, thereby offering a novel target for tumor immunotherapy.


Assuntos
Biomarcadores Tumorais , Neoplasias , Humanos , Raios X , Prognóstico , Radiografia , Biomarcadores Tumorais/genética , Instabilidade de Microssatélites , Neoplasias/genética , Proteína 1 Complementadora Cruzada de Reparo de Raio-X/genética
3.
Heliyon ; 10(1): e23439, 2024 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-38148824

RESUMO

Objective: Peripheral blood routine parameters (PBRPs) are simple and easily acquired markers to identify ulcerative colitis (UC) and Crohn's disease (CD) and reveal the severity, whereas the diagnostic performance of individual PBRP is limited. We, therefore used four machine learning (ML) models to evaluate the diagnostic and predictive values of PBRPs for UC and CD. Methods: A retrospective study was conducted by collecting the PBRPs of 414 inflammatory bowel disease (IBD) patients, 423 healthy controls (HCs), and 344 non-IBD intestinal diseases (non-IBD) patients. We used approximately 70 % of the PBRPs data from both patients and HCs for training, 30 % for testing, and another group for external verification. The area under the receiver operating characteristic curve (AUC) was used to evaluate the diagnosis and prediction performance of these four ML models. Results: Multi-layer perceptron artificial neural network model (MLP-ANN) yielded the highest diagnostic performance than the other three models in six subgroups in the training set, which is helpful for discriminating IBD and HCs, UC and CD, active CD and remissive CD, active UC and remissive UC, non-IBD and HCs, and IBD and non-IBD with the AUC of 1.00, 0.988, 0.942, 1.00, 0.986, and 0.97 in the testing set, as well as the AUC of 1.00, 1.00, 0.773, 0.904, 1.00 and 0.992 in the external validation set. Conclusion: PBRPs-based MLP-ANN model exhibited good performance in discriminating between UC and CD and revealing the disease activity; however, a larger sample size and more models need to be considered for further research.

4.
Behav Neurol ; 2023: 2266691, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-38074419

RESUMO

Objective: To evaluate the hematoma clearance and safety of small bone window craniotomy through the lateral fissure Rolandic point-insular lobe approach for patients with hypertensive intracerebral hemorrhage (HICH) in posterior basal ganglia. Methods: This retrospective study enrolled a total of 86 patients with HICH in the posterior basal ganglia region who underwent surgery between January 2020 and December 2021. These patients were divided into two groups: the conventional group and the study group. The intraoperative information, postoperative hematoma clearance rate, increasing rate of cerebral edema and rebleeding occurrence rate, postoperative complication rate, and prognoses were compared between the two groups. Additionally, we observed and compared the rate of postoperative cerebral hematoma increase, as well as the neurological function and activities of daily living (ADL) at admission, 3 months, and 6 months after surgery in both groups. Univariate and multivariate logistic regression analyses were performed to explore factors affecting the prognosis of patients with HICH in the posterior basal ganglia region after small bone window craniotomy through the lateral fissure Rolandic point-insular lobe approach. Results: The study group exhibited significantly shorter automatic eye-opening times and hospital stays compared to the conventional group (P < 0.05). Furthermore, the study group demonstrated better hematoma clearance rates, lower rates of cerebral hematoma at postoperative 48 h and 72 h, and lower rates of rebleeding compared to the conventional group (P < 0.05). At 3 and 6 months postsurgery, the study group exhibited a significantly greater improvement in neurological function and ADL compared to the conventional group (P < 0.05). Additionally, the incidence of postoperative complications in the study group was lower than that in the conventional group (P < 0.05). Furthermore, the prognosis of the study group was significantly better than that of the conventional group at the 6-month follow-up (P < 0.05). Conclusion: A small bone window craniotomy via transsylvian Rolandic point-insular approach has been shown to improve the hematoma clearance rate in patients with HICH in the posterior basal ganglia region while also reducing the incidence of complications. This approach is highly safe and feasible for implementation in clinical practice.


Assuntos
Hemorragia Intracraniana Hipertensiva , Humanos , Hemorragia Intracraniana Hipertensiva/cirurgia , Estudos Retrospectivos , Atividades Cotidianas , Resultado do Tratamento , Craniotomia , Gânglios da Base/cirurgia , Hemorragia Cerebral , Hematoma
5.
PeerJ ; 11: e16350, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37953769

RESUMO

Generally, deciduous and evergreen trees coexist in subtropical forests, and both types of leaves are attacked by numerous insect herbivores. However, trees respond and defend themselves from herbivores in different ways, and these responses may vary between evergreen and deciduous species. We examined both the percentage of leaf area removed by herbivores as well as the percentage of leaves attacked by herbivores to evaluate leaf herbivore damage across 14 subtropical deciduous and evergreen tree species, and quantified plant defenses to varying intensities of herbivory. We found that there was no significant difference in mean percentage of leaf area removed between deciduous and evergreen species, yet a higher mean percentage of deciduous leaves were damaged compared to evergreen leaves (73.7% versus 60.2%). Although percent leaf area removed was mainly influenced by hemicellulose concentrations, there was some evidence that the ratio of non-structural carbohydrates:lignin and the concentration of tannins contribute to herbivory. We also highlight that leaf defenses to varying intensities of herbivory varied greatly among subtropical plant species and there was a stronger response for deciduous trees to leaf herbivore (e.g., increased nitrogen or lignin) attack than that of evergreen trees. This work elucidates how leaves respond to varying intensities of herbivory, and explores some of the underlying relationships between leaf traits and herbivore attack in subtropical forests.


Assuntos
Herbivoria , Árvores , Árvores/fisiologia , Lignina , Folhas de Planta/fisiologia , Plantas
6.
RSC Adv ; 13(44): 30704-30717, 2023 Oct 18.
Artigo em Inglês | MEDLINE | ID: mdl-37869385

RESUMO

As a powerful tool for biological sensing, electrochemical biosensors have attracted much attention due to their ability to integrate biological recognition elements on an electrochemical interface and convert target analyte information into measurable electrochemical signals. Despite the abundance of literature published on the topic, no comprehensive surveys have been conducted to evaluate the area of electrochemical biosensors with bibliometric techniques. This paper employs VOSviewer to analyze and visualize literature from 2003 to 2023 in the Web of Science in order to gain an understanding of the development of the field of electrochemical biosensors in recent years. Co-occurrence and co-citation analysis are employed to identify research hotspots, trace evolutionary paths, and comprehend development trends in the field. Moreover, by analyzing highly cited and representative literature from different time periods, it is possible to recognize the major research hotspots and grasp the development pulse. The results of this study provide a comprehensive overview of the field of electrochemical biosensors and can be used to guide future research.

7.
J Cancer Res Clin Oncol ; 149(7): 3259-3266, 2023 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-35918464

RESUMO

BACKGROUND: Next-generation sequencing (NGS) is an emerging technology that can comprehensively assess the diversity of the immune system. We explored the feasibility of NGS in detecting minimal residual disease (MRD) in childhood acute lymphoblastic leukemia (ALL) based on immunoglobulin and T cell receptor. METHODS: Bone marrow samples were collected pre- and post-treatment with pediatric ALL admitted to Shenzhen Children's Hospital from February 1st, 2020 to January 31st, 2021. We analyzed the MRD detected by NGS, multiparametric flow cytometry (MFC) and real-time quantitative PCR (RQ-PCR), and analyzed risk factors of positive NGS-MRD at the end of B-ALL induction chemotherapy. RESULTS: A total of paired 236 bone marrow samples were collected from 64 children with ALL (58 B-ALL and 6 T-ALL). The decrease in the clonal rearrangement frequency of IGH, IGK, and IGL was generally consistent after treatment. Positive MRD was detected in 57.5% (77/134) of B-ALL and 80% (12/15) of T-ALL by NGS after chemotherapy, which was higher than those detected by MFC and RQ-PCR. In B-ALL patients, MRD results detected by NGS were consistent with MFC (r = 0.708, p < 0.001) and RQ-PCR (r = 0.618, p < 0.001). At the end of induction, NGS-MRD of 40.4% B-ALL was > 0.01% and multivariate analysis indicated that ≧2 clonal rearrangement sequences before treatment were an independent factor of negative NGS-MRD. CONCLUSIONS: NGS is more sensitive than MFC and RQ-PCR for MRD measurement. B-ALL children with ≧2 clonal rearrangements detected by NGS before treatment are difficult to switch to negative MRD after chemotherapy.


Assuntos
Leucemia-Linfoma Linfoblástico de Células Precursoras B , Leucemia-Linfoma Linfoblástico de Células Precursoras , Leucemia-Linfoma Linfoblástico de Células T Precursoras , Criança , Humanos , Neoplasia Residual/diagnóstico , Neoplasia Residual/genética , Leucemia-Linfoma Linfoblástico de Células Precursoras/diagnóstico , Leucemia-Linfoma Linfoblástico de Células Precursoras/tratamento farmacológico , Leucemia-Linfoma Linfoblástico de Células Precursoras/genética , Sequenciamento de Nucleotídeos em Larga Escala
8.
Environ Pollut ; 316(Pt 2): 120603, 2023 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-36343858

RESUMO

Polystyrene microplastics (PS) are decomposed very slowly due to their recalcitrance and inevitably interact with the changing climate. How the interaction between PS and increasing CO2 concentration affects the plant-soil system is rarely investigated. Here, a free-air CO2 enrichment system in farm fields was used to study the impacts of PS added to soil at 10 mg kg-1 on rice and soil bacterial communities at different CO2 levels (ambient∼390 ppm and elevated∼590 ppm). Results showed that single PS interfered with Fe, Mn and Zn uptake of rice, and it increased the abundances of bacteria taxa assigned to N turnover and urease activities, leading to altered soil N transformation and availability. Elevated CO2 alone enhanced rice photosynthesis, decreased the abundances of nitrogen-fixation bacteria, and induced co-occurrence patterns between bacteria simplified and decentralized. Combined PS and elevated CO2 significantly decreased rice stomatal conductance and transpiration rate by 56.70% and 29.46%, respectively, and further inhibited elements uptake. Besides, combined exposure significantly disturbed bacterial amino acid metabolism, and stimulated the adaptative responses of resistant bacteria. Overall, this study revealed that increasing CO2 concentrations may exacerbate the impacts of PS on rice performance and soil bacterial communities, providing new insights into the interaction between microplastics and climate change.


Assuntos
Oryza , Oryza/metabolismo , Solo , Dióxido de Carbono/análise , Microplásticos , Poliestirenos/farmacologia , Plásticos/farmacologia
9.
Zootaxa ; 5174(2): 165-180, 2022 Aug 09.
Artigo em Inglês | MEDLINE | ID: mdl-36095405

RESUMO

We determined the complete mitochondrial genome of Thereuopoda clunifera (Chilopoda: Scutigeridae) to clarify the phylogenetic status within Chilopoda. Using Sanger sequencing and next-generation sequencing technologies, the entire mitogenome of T. clunifera was assembled and annotated, with 14,898 bp in length and 37 genes (13 protein-coding genes, 22 transfer RNA genes, and two ribosomal RNA genes), which are usually found in arthropod mitogenomes. Only one D-loop contained no repeat element. The base composition of T. clunifera was found to be A + T content of 69.55% and G + C content of 30.45%. The AT-skew of T. clunifera was positive, while the GC-skew was negative. The gene order of T. clunifera was identical to that of Scutigera coleoptrata that has been unique among those so far determined for the Arthropoda. We also performed phylogenetic analyses of 25 Myriapoda species to further explore the taxonomic and evolutionary relationships within Myriapoda and Chilopoda. Phylogenetic analyses supported that the division of Chilopoda into subclasses Notostigmophora and Pleurostigmophora.


Assuntos
Artrópodes , Genoma Mitocondrial , Animais , Artrópodes/genética , Composição de Bases , Quilópodes , Ordem dos Genes , Filogenia
10.
Insects ; 13(8)2022 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-36005354

RESUMO

Soil macrofauna, such as Spirobolus bungii, are an important component of ecosystems. However, systematic studies of the genetic diversity, population genetic structure, and the potential factors affecting the genetic differentiation of S. bungii are lacking. We performed a population genetic study of 166 individuals from the mountains to the south of the Yangtze River, north of the Yangtze River in Nanjing city, and near Tianjin city, in order to investigate the correlations between geographical distance and genetic diversity. A total of 1182 bp of COX2 and Cytb gene sequences of mitochondrial DNA, and 700 bp of the 18S rRNA gene sequence were analyzed. There were two haplotypes and one variable site in the 18S rRNA gene, and 28 haplotypes and 78 variable sites in the COX2 and Cytb genes. In this study, the 18S rRNA gene was used for species identification, and mtDNA (concatenated sequences with Cytb and COX2) was used for population genetic analysis. Structure cluster analysis indicated that the genetic structures of the different populations of S. bungii tended to be consistent at small geographical scales. Phylogenetic trees revealed that the haplotypes were clearly divided into three branches: the area south of the Yangtze River, the area to the north of the Yangtze River in Nanjing, and the area in Tianjin. Large geographical barriers and long geographical distance significantly blocked gene flow between populations of S. bungii. Our results provide a basic theoretical basis for subsequent studies of millipede taxonomy and population genetic evolution.

11.
Environ Sci Pollut Res Int ; 29(27): 41081-41092, 2022 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-35083690

RESUMO

Soil cadmium (Cd) and pyrene (PYR) pollutions have gained worldwide attention due to their negative effects on the environment. Intermittent flooding in rain-rich areas may affect phytoremediation of Cd and PYR in soil. Therefore, a pot-culture experiment, with and without flooding, was conducted to study the effects of flooding on soil Cd and PYR phytoremediation. Concentrations of Cd, PYR, and nutrients in soils and plants, as well as plant physiological and biochemical responses, were examined. Under both flooding and non-flooding conditions, willow (Salix × aureo-pendula CL 'J1011') demonstrated a better ability to remove soil Cd and PYR. Flooding led to higher Cd accumulation in roots than that in shoots. Conversely, non-flooding resulted in higher Cd accumulation in shoots than that in roots. The maximum concentrations of Cd in shoots were 11.02 and 14.07 mg kg-1 with and without flooding, respectively. The maximum dissipation rates of PYR in soil were 47.35% and 88.61% under flooding and non-flooding conditions, respectively. In addition, flooding significantly increased the photosynthetic pigment, photosynthetic fluorescence, and chlorophyll fluorescence parameters in leaves, compared with non-flooding treatment. Flooding also increased the concentrations of Mg, Mn, P, Fe, and K in roots and shoots. This study outlines an effective insight for the phytoremediation of Cd- and PYR-contaminated soil under flooding condition.


Assuntos
Salix , Poluentes do Solo , Biodegradação Ambiental , Cádmio/análise , Raízes de Plantas/química , Pirenos , Solo , Poluentes do Solo/análise
12.
Bull Environ Contam Toxicol ; 107(6): 1236-1242, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34164721

RESUMO

Cadmium accumulation in rice is a major source of Cd exposure in humans worldwide. A three-year field experiment was conducted to investigate the ecological safety and long-term stability of biochar combined with lime or silicon fertilizer for Cd immobilization in a polluted rice paddy. The results showed that the application of combined ameliorants could reduce the Cd content in brown rice to meet the Chinese maximum permissible limit for Cd content in food products (0.2 mg/kg). In addition, such amendments stimulated metabolic pathways in soil bacteria, including carbon metabolism, citrate cycle, pyruvate metabolism, biosynthesis of amino acids, and glycolysis/gluconeogenesis, revealing improvements in soil biological activity and soil health. Therefore, the results provide a practical strategy for the safe utilization of farmland with mild levels of heavy metal pollution.


Assuntos
Oryza , Poluentes do Solo , Cádmio/análise , Poluição Ambiental , Fertilizantes , Humanos , Solo , Poluentes do Solo/análise
13.
Sci Total Environ ; 769: 145224, 2021 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-33485209

RESUMO

Plant-associated microorganisms play an important role in controlling heavy metal uptake and accumulation in aerial parts. The microbial community and its interaction with Cd accumulation by willow were assessed to explore the association of phytoextraction efficiency and rhizospheric microbial populations. Therefore, the rhizosphere microbial compositions of three willow genotypes grown in two Cd polluted sites were investigated, focusing on their interactions with phytoremediation potential. Principal coordinate analysis revealed a significant effect of genotype on the rhizosphere microbial communities. Distinct beneficial microorganisms, such as plant growth promoting bacteria (PGPB) and mycorrhizal fungi, were assembled in the rhizosphere of different willow genotypes. Linear mixed models showed that the relative abundance of PGPB was positively associated (p < 0.01) with Cd accumulation, since these microbes significantly increased willow growth. The higher abundance of arbuscular mycorrhizal fungi in the rhizosphere of Salix × aureo-pendula CL 'J1011' at the Kejing site, showed a negative correlation with the Cd content, but a positive correlation with biomass. Conversely, mycorrhizal fungi, were more abundant in the rhizosphere of S. × jiangsuensis CL. 'J2345' and positively correlated with the Cd content in willow tissues. This study provides new insights into the distinctive microbial communities in rhizosphere of different willow genotypes, which may be consistent with the phytoremediation potential.


Assuntos
Microbiota , Salix , Poluentes do Solo , Biodegradação Ambiental , Cádmio , Genótipo , Raízes de Plantas , Rizosfera , Solo , Microbiologia do Solo
14.
Ecotoxicol Environ Saf ; 207: 111275, 2021 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-32920316

RESUMO

In-situ immobilization is an effective and economically viable strategy for remediation of soil extensively polluted with heavy metals. The long-term sustainability is critical for the remediation practice. In the present study, a ten-year experiment was performed in a Cd-polluted agricultural field to evaluate the long-term stability of lime, silicon fertilizer (SF), fused calcium magnesium phosphate fertilizer (FCMP), bone charcoal, steel slag, and blast furnace slag with one-off application. All amendments had no significant effect on biomass but significantly reduced Cd uptake by Artemisia selengensis at higher dose. Among them, SF and FCMP applied at 1% could reduce Cd uptake by more than 40% to meet the Chinese maximum permissible limit for Cd content in food products (50 µg kg-1). These amendments stimulated high Cd immobilization by increasing the soil pH and decreasing the soil acid-extractable Cd content, which were closely associated with Cd uptake. In addition, the two amendments altered the soil microbial structure and stimulated metabolism pathways, including amino acid, carbohydrate, and lipid metabolism, which are beneficial for soil function and quality. The results proved that SF and FCMP at 1% are stable and ecologically safe amendments, suitable for long-term Cd immobilization, and provide a strategy to mitigate the risk of food product contamination in heavy-metal-polluted soil.


Assuntos
Cádmio/análise , Monitoramento Ambiental , Poluentes do Solo/análise , Biomassa , Cádmio/metabolismo , Compostos de Cálcio , Carvão Vegetal/química , Poluição Ambiental , Recuperação e Remediação Ambiental , Fertilizantes , Metais Pesados/química , Óxidos , Fosfatos , Solo/química
15.
Sci Total Environ ; 754: 141898, 2021 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-32916483

RESUMO

Antibiotic resistance and rising CO2 levels are considered among the most significant challenges we will face in terms of global development over the following decades. However, the impact of elevated CO2 on soil antibiotic resistance has rarely been investigated. We used a free-air CO2 enrichment system to investigate the potential risks posed by applying mineral and organic fertilizers to paddy soil at current CO2 concentration (370 ppm) and future elevated CO2 (eCO2, 570 ppm predicted for 2100). Organic fertilizer substitution (substituting the mineral fertilizer by 50% N) alone increased the plant uptake and soil residue of sulfamethazine, and enriched sulfonamide resistance genes (sul1, sul2), tetracycline resistance genes (tetG, tetM) and class 1 integron (intl1). But it decreased the rice grain yield (by 7.6%). Comparatively, eCO2 decreased the sul2, tetG and intl1 gene abundances by organic fertilizer substitution, and meanwhile increased grain yield (by 8.4%). Proteobacteria and Nitrospirae were potential hosts of antibiotic resistance genes (ARGs). Horizontal gene transfer via intl1 may play an important role in ARGs spread under eCO2. Results indicated that future elevated CO2 concentration could modify the effects of organic fertilizer substitution on rice yield and soil ARGs, with unknown implications for future medicine and human health.


Assuntos
Fertilizantes , Oryza , Antibacterianos , Dióxido de Carbono/análise , Resistência Microbiana a Medicamentos/genética , Fertilizantes/análise , Solo
16.
Mol Biol Rep ; 47(10): 8265-8269, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-32929651

RESUMO

The earthworm (Drawida gisti) is an ecologically important sentinel species for soils that is widely distributed throughout Eastern Asia; however, the molecular tools required for genetic diversity studies of this earthworm are still rare. The aim of the study was to develop and characterize microsatellite markers in D. gisti and to evaluate their transferability to other Drawida species. We employed a RAD-seq approach to develop 12 microsatellite markers for D. gisti. The characterization and analysis of loci was achieved using 24 individuals of D. gisti from a natural population. The number of alleles per locus ranged from four to eleven, with an average of 6.5. Observed and expected heterozygosities varied from 0.708 to 0.958, and from 0.568 to 0.883, respectively. No loci presented significant deviations from the Hardy-Weinberg equilibrium, while linkage disequilibrium was detected between three loci. Cross-species amplification tests suggested that the transferability of ten loci was positive for the two congeners D. japonica and D. ghilarovi. This set of microsatellite markers may be used to evaluate the genetic diversity and population structures of D. gisti and related species in the future.


Assuntos
Alelos , Loci Gênicos , Heterozigoto , Repetições de Microssatélites , Oligoquetos/genética , Polimorfismo Genético , Animais
18.
Zhongguo Dang Dai Er Ke Za Zhi ; 22(7): 796-803, 2020 Jul.
Artigo em Chinês | MEDLINE | ID: mdl-32669181

RESUMO

OBJECTIVE: To study the biomarkers for human coronary artery endothelial cell (HCAEC) injury induced by Kawasaki disease (KD) using isobaric tags for relative and absolute quantitation (iTRAQ) proteomics. METHODS: HCAECs cultured with the serum of children with KD were used as the KD group, and those cultured with the serum of healthy children was used as the healthy control group. The iTRAQ technique was used to measure the expression of proteins in two groups. The data on proteins were analyzed by bioinformatics. Western blot was used for the validation of protein markers. RESULTS: A total of 518 significantly differentially expressed proteins were identified (with an absolute value of difference fold of >1.2, P<0.05). The gene ontology analysis showed that the differentially expressed proteins were significantly enriched in biological processes (including cellular processes, metabolic processes, and biological regulation), cellular components (including cell parts, cells, and organelles), and molecular functions (including binding, catalytic activity, and molecular function regulators). The KEGG analysis showed that the proteins were significantly enriched in the signaling pathways of ribosomes, PI3K-Akt signaling pathway, and transcriptional dysregulation in cancer. The PPI network showed that the top 9 protein markers in relation density were PWP2, MCM4, MCM7, MCM5, MCM3, MCM2, SLD5, HDAC2, and MCM6, which were selected as the protein markers for coronary endothelial injury in KD. Western blot showed that the KD group had significantly lower expression levels of the protein markers HDAC2, PWP2, and MCM2 than the healthy control group (P<0.05). CONCLUSIONS: The serum of children with KD significantly changes the protein expression pattern of HCAECs and affects the signaling pathways associated with the cardiovascular system, which provides a new basis for the pathophysiological mechanism and therapeutic targets of KD.


Assuntos
Síndrome de Linfonodos Mucocutâneos , Proteômica , Criança , Biologia Computacional , Vasos Coronários , Células Endoteliais , Humanos , Fosfatidilinositol 3-Quinases
19.
Am J Cancer Res ; 10(4): 1255-1270, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32368400

RESUMO

Recent studies have shown that IRF-1 plays a significant role in various tumour-induced chemoresistance, but its role and mechanism in gastric cancer-associated chemoresistance are not clear. Our study showed that IRF-1 expression could reverse gastric cancer-related chemoresistance. Dysregulated DNA repair is an important cause of chemoresistance. We established a chemoresistant gastric cancer cell line and found that drug-resistant gastric cancer cells had increased DNA repair ability and that IRF-1 regulated DNA damage repair. Further studies showed that IRF-1 inhibited the expression of RAD51 directly by binding to the RAD51 promoter to affect DNA damage repair; this binding reversed resistance. However, restoring the expression of RAD51 halted the inhibitory effect of IRF-1 partially. Also, we revealed that the overexpression of IRF-1 in a mouse model synergized with chemotherapeutic drugs to inhibit tumour growth. Finally, IRF-1 expression correlated with RAD51 expression in gastric cancer specimens. The expression of IRF-1 and RAD51 are both related to the survival duration of patients with gastric cancer. These results suggest that targeting IRF-1-RAD51 could be an effective approach to reversing multidrug resistance in gastric cancer.

20.
Genomics ; 112(5): 3056-3064, 2020 09.
Artigo em Inglês | MEDLINE | ID: mdl-32454169

RESUMO

Here, the complete mitochondrial genome (mitogenome) of Drawida gisti was sequenced and compared with the mitogenomes of other Metagynophora species. The circular mitogenome was 14,648 bp in length and contained two ribosomal RNA genes (rRNAs), 13 protein-coding genes (PCGs), and 22 transfer RNA genes (tRNAs). The types of constitutive genes and the direction of the coding strand that appeared in Drawida mitogenome were identical to those observed in other Metagynophora species, except for a missing lengthy non-coding region. The conservative relationships between Drawida species were supported by the overall analyses of 13 PCGs, two rRNAs, and 22 tRNAs. A comparison of the Metagynophora mitogenomes revealed that the ATP8 gene possessed the highest polymorphism among the 13 PCGs and two rRNAs. Phylogenetic analysis suggested that the Moniligastridae contained Drawida, which is a primitive Metagynophora group. Our study provides a step forward toward elucidating the evolutionary linkages within Drawida and even Metagynophora.


Assuntos
Genoma Mitocondrial , Oligoquetos/genética , Animais , Composição de Bases , Uso do Códon , DNA Mitocondrial/química , Genes de RNAr , Proteínas Mitocondriais/genética , Oligoquetos/classificação , Filogenia , RNA de Transferência/química , RNA de Transferência/genética
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